Publication Search Results

Exact matches for:

• Author = Yang P     [web profile page]

51. Yang P, Patrick E, Humphrey SJ, Ghazanfar S, James DE, Jothi R, Yang YH
Pengyi Yang, Ellis Patrick, Sean J Humphrey, Shila Ghazanfar, David E James, Raja Jothi, Jean Yee Hwa Yang: KinasePA: Phosphoproteomics data annotation using hypothesis driven kinase perturbation analysis, Proteomics, 16 (2016), no. 13, 1868–1871.

52. Zheng X, Yang P, Lackford B, Bennett BD, Wang L, Li H, Wang Y, Miao Y, Foley JF, Fargo D, Jin Y, Williams CJ, Jothi R, Hu G
Xiaofeng Zheng, Peengyi Yang, Brad Lackford, Brian D. Bennett, Li Wang, Hui Li, Yu Wang, Yiliang Miao, Julie F. Foley, David C. Fargo, Ying Jin, Carmen J. Williams, Raja Jothi, Guang Hu: CNOT3-Dependent mRNA Deadenylation Safeguards the Pluripotent State, Stem Cell Reports, 7 (2016), no. 5, 897–910.

53. Domanova W, Kycer J, Chaudhuri R, Yang P, Vafaee F, Fazakerley DJ, Humphrey SJ, James DE, Kuncic Z
Westa Domanova, James Krycer, Rima Chaudhuri, Pengyi Yang, Fatemeh Vafaee, Daniel Fazakerley, Sean Humphrey, David James, Zdenka Kuncic: Unraveling Kinase Activation Dynamics Using Kinase-Substrate Relationships from Temporal Large-Scale Phosphoproteomics Studies, PLoS One, 11 (2016), no. 6, Art. e0157763 (14 pages).

54. Yang P, Patrick E, Humphrey SJ, Ghazanfar S, James DE, Jothi R, Yang YH
Pengyi Yang, Ellis Patrick, Sean J. Humphrey, Shila Ghazanfar, David E. James, Raja Jothi, Jean Yee Hwa Yang: KinasePA: Phosphoproteomics data annotation using hypothesis driven kinase perturbation analysis, Proteomics, 16 (2016), 1868 – 1871.

55. Domanova W, Krycer JR, Chaudhuri R, Yang P, Vafaee F, Fazakerley DJ, Humphrey SJ, James DE, Kuncic Z
Westa Domanova , James Krycer , Rima Chaudhuri, Pengyi Yang, Fatemeh Vafaee, Daniel Fazakerley, Sean Humphrey, David James, Zdenka Kuncic: Unraveling Kinase Activation Dynamics Using Kinase-Substrate Relationships from Temporal Large-Scale Phosphoproteomics Studies, PLoS One, 23 June 2016 (2016), Online.

56. Yang P, Zheng X, Jayaswal V, Hu G, Yang YH, Jothi R
Pengyi Yang, Xiaofeng Zheng, Vivek Jayaswal, Guang Hu, Jean Yee Hwa Yang, Raja Jothi: Knowledge-Based Analysis for Detecting Key Signaling Events from Time-Series Phosphoproteomics Data, PLoS Computational Biology, 11 (2015), no. 8, Art. e100440318 (18 pages).

57. Ma X, Yang P, Kaplan WH, Lee BH, Wu LE, Yang YH, Yasunaga M, Sato K, Chisholm DJ, James DE
Xiuquan Ma, Pengyi Yang, Warren H Kaplan, Bon Hyang Lee, Lindsay E Wu, Jean Yee-Hwa Yang, Mayu Yasunaga, Kenzo Sato, Donald J Chisholm, David E James: ISL1 Regulates Peroxisome Proliferator-Activated Receptor γ Activation and Early Adipogenesis via Bone Morphogenetic Protein 4-Dependent and -Independent Mechanisms, Molecular and Cellular Biology, 34 (2014), no. 29, 3607–3617.

58. Yang P, Patrick E, Tan SX, Fazakerley DJ, Burchfield JG, Gribben C, Prior MJ, James DE, Yang YH
Pengyi Yang, Ellis Patrick, Shi-Xiong Tan, Daniel J Fazakerley, James Burchfield, Christopher Gribben, Matthew J Prior, David E James and Yee Hwa Yang: Direction pathway analysis of large-scale proteomics data reveals novel features of the insulin action pathway, Bioinformatics, 30 (2014), no. 6, 808–814.

59. Humphrey SJ, Yang G, Yang P, Fazakerley DJ, Stöckli J, Yang YH, James DE
Sean J Humphrey, Guang Yang, Pengyi Yang, Daniel J Fazakerley, Jacqueline Stöckli, Jean Y Yang, and David E James: Dynamic adipocyte phosphoproteome reveals that akt directly regulates mTORC2, Cell Metabolism, 17 (2013), no. 6, 1009–1020.

60. Yang P, Ma J, Wang P, Zhu Y, Zhou BB, Yang YH
Pengyi Yang, Jie Ma, Penghao Wang, Yunping Zhu, Bing B. Zhou, and Yee Hwa (Jean) Yang: Improving X!Tandem on Peptide Identification from Mass Spectrometry by Self-Boosted Percolator, IEEE/ACM Transactions on Computational Biology and Bioinformatics, 9 (2012), no. 5, 1273–1280.

61. Wang P, Yang P, Yang YH
P Wang, P Yang and J Y H Yang: OCAP: An open comprehensive analysis pipeline for iTRAQ, Bioinformatics, 28 (2012), no. 10, 1404–1405.

62. Yang P, Humphrey SJ, Fazakerley DJ, Prior MJ, Yang G, James DE, Yang YH
Yang P, Humphrey SJ, Fazakerley DJ, Prior MJ, Yang G, James DE, Yang JYH: Re-Fraction: A Machine Learning Approach for Deterministic Identification of Protein Homologues and Splice Variants in Largescale MS-based Proteomics, Journal of Proteome Research, 11 (2012), no. 5, 3035–3045.

63. Yang P, Ho JWK, Yang YH, Zhou BB
Pengyi Yang, Joshua WK Ho, Yee Hwa Yang, Bing B Zhou: Gene-gene interaction filtering with ensemble of filters, BMC Bioinformatics, 12, Supp 1 (2011), no. S10, 10 pages.

64. Wang P, Yang P, Arthur J, Yang YH
Penghao Wang, Pengyi Yang, Jonathan Arthur and Jean Yee Hwa Yang: A dynamic wavelet-based algorithm for pre-processing tandem mass spectrometry data, Bioinformatics, 26 (2010), no. 18, 2242–2249.