Publication Search Results
Exact matches for:
- Author = Yang YH [web profile page]
51.
Ghazanfar S, Strbenac D, Ormerod JT, Yang YH, Patrick E
Shila Ghazanfar, Dario Strbenac, John T Ormerod, Jean Y H Yang and Ellis Patrick:
DCARS: Differential correlation across ranked samples,
Bioinformatics,
35
(2019),
no. 5,
823–829.
52.
Hong AM, Ferguson P, Dodds T, Jones D, Li M, Yang YH, Scolyer RA
Angela M Hong, Peter Ferguson, Tristan Dodds, Deanna Jones, Mengbo Li, Jean Yang, Richard A Scolyer:
Significant association of PD-L1 expression with human papillomaviruspositivity and its prognostic impact in oropharyngeal cancer,
Oral Oncology,
92
(2019),
33–39.
53.
Lim SY, Lee JH, Gide TN, Menzies AM, Guminski A, Carlino MS, Breen EJ, Yang YH, Ghazanfar S, Kefford RF, Scolyer RA, Long GV, Rizos H
Su Y Lim, Jenny H Lee, Tuba N Gide, Alexander M Menzies, Alexander Guminski, Matteo S Carlino, Edmond J Breen, Jean Y H Yang, Shila Ghazanfar, Richard F Kefford, Richard A Scolyer, Georgina V Long and Helen Rizos:
Circulating cytokines predict immune-related toxicity in melanoma patients receiving anti-PD-1–based immunotherapy,
Clinical Cancer Research,
25
(2019),
no. 5,
1557–1563.
54.
da Silva IP, Wang KYX, Wilmott JS, Holst J, Carlino MS, Park JJ, Quek C, Wongchenko M, Yan Y, Mann G, Johnson DB, Quade JLM, Rai R, Kefford RF, Rizos H, Scolyer RA, Yang YH, Long GV, Menzies AM
Inês Pires da Silva, Kevin Y.X. Wang, James S. Wilmott, Jeff Holst, Matteo S. Carlino, John J. Park, Camelia Quek, Matthew Wongchenko, Yibing Yan, Graham Mann, Douglas B. Johnson, Jennifer L. McQuade, Rajat Rai, Richard F. Kefford, Helen Rizos, Richard A. Scolyer, Jean Y.H. Yang, Georgina V. Long and Alexander M. Menzies:
Distinct molecular profiles and immunotherapy treatment outcomes of V600E and V600K BRAF-mutant melanoma,
Clinical Cancer Research,
25
(2019),
no. 4,
1272–1279.
55.
Vernon ST, Hansen T, Knott KA, Yang YH, O'Sullivan JF, Figtree GA
Stephen T Vernon, Thomas Hansen, Katharine A. Knott, Jean Y. Yang, John F O'Sullivan and Gemma Figtree.:
Utilizing state-of-the-art “omics” technology and bioinformatics to identify new biological mechanisms and biomarkers for coronary artery disease,
Microcirculation,
NA
(2018),
e12488.
56.
Kim T, Chen IR, Lin Y, Wang A, Yang YH, Yang P
Taiyun Kim, Irene R. Chen, Yingxin Lin, Andy Wang, Jean Y.H. Yang and Pengyi Yang:
Impact of similarity metrics on single-cell RNA-seq data clustering,
Briefings in Bioinformatics,
(2018),
EPub.
57.
Chaudhuri R, Krycer JR, Fazakerley DJ, Fisher-Wellman K, Su Z, Höhn KL, Yang YH, H JY, Kuncic Z, Vafaee F, James DE
R Chaudhuri, J. Krycer, D. Fazakerley, K. Fisher-Wellman, Z. Su, K.L. Höhn, J.Y.H. Yang, Z. Kuncic, F. Vafaee and D. E. James:
The transcriptional response to oxidative stress is part of, but not sufficient for, insulin resistance in adipocytes,
Scientific Report,
8
(2018),
no. 1,
1774.
58.
Bisogni AJ, Ghazanfar S, Williams EO, Marsh HM, Yang YH, Lin DM
A.J. Bisogni and S. Ghazanfar and E. O. Williams and H.M. Marsh and J. Y. H. Yang and D.M. Lin:
Tuning of delta-protocadherin adhesion through combinatorial diversity,
Elife,
7
(2018),
EPub.
59.
Lim SY, Lee JH, Gide TN, Menzies AM, Guminski A, Carlino MS, Breen EJ, Yang YH, Ghazanfar S, Kefford RF, Scolyer RA, Long GV, Rizos H
Su Y Lim, Jenny H Lee, Tuba N Gide, Alexander M Menzies, Alexander Guminski, Matteo S Carlino, Edmond J Breen, Jean YH Yang, Shila Ghazanfar, Richard F Kefford, Richard A Scolyer, Georgina V Long, Helen Rizos:
Circulating cytokines predict immune-related toxicity in melanoma patients receiving anti-PD-1-based immunotherapy,
Clinical Cancer Research,
1
(2018),
2795.2018.
60.
Sykes EK, McDonald CE, Ghazanfar S, Mactier S, Thompson JF, Scolyer RA, Yang YH, Mann GJ, Christopherson RI
Erin K Sykes, Cassandra E McDonald, Shila Ghazanfar, Swetlana Mactier, John F Thompson, Richard A Scolyer, Jean Y Yang, Graham J Mann, Richard I Christopherson:
A 14-Protein Signature for Rapid Identification of Poor Prognosis Stage III Metastatic Melanoma,
PROTEOMICS–Clinical Applications,
12
(2018),
no. 3,
1700094.
61.
Ghazanfar S, Strbenac D, Ormerod JT, Yang YH, Patrick E
Shila Ghazanfar, Dario Strbenac, John T Ormerod, Jean Y H Yang, Ellis Patrick:
DCARS: differential correlation across ranked samples,
Bioinformatics,
1
(2018),
bty698.
62.
Yang P, Ormerod JT, Liu W, Ma C, Zomaya AY, Yang YH
Pengyi Yang, John T. Ormerod, Wei Liu, Chendong Ma, Albert Y. Zomaya and Jean Y. H. Yang:
AdaSampling for positive-unlabeled and label noise learning with bioinformatics applications,
IEEE Transactions on Cybernetics,
1
(2018),
1–12.
63.
Chaudhuri R, Krycer JR, Fazakerley DJ, Fisher-Wellman KH, Su Z, Hoehn KL, Yang YH, Kuncic Z, Vafaee F, James DE
Rima Chaudhuri, James R Krycer, Daniel J Fazakerley, Kelsey H Fisher-Wellman, Zhiduan Su, Kyle L Hoehn, Jean Yee Hwa Yang, Zdenka Kuncic, Fatemeh Vafaee & David E James:
The transcriptional response to oxidative stress is part of, but not sufficient for, insulin resistance in adipocytes,
Scientific Reports,
8
(2018),
no. 1,
article 1774.
64.
Fazakerley DJ, Chaudhuri R, Yang P, Maghzal GJ, Thomas KC, Krycer JR, Humphrey SJ, Parker BL, Fisher-Wellman KH, Meoli CC, Hoffman NJ, Diskin C, Birchfield JG, Cowley MJ, Kaplan WH, Modrusan Z, Kolumam G, Yang YH, Chen DL, Samocha-Bonet D, Greenfield JR, Hoehn KL, Stocker R, James DE
Daniel J Fazakerley, Rima Chaudhuri, Pengyi Yang, Ghassan J Maghzal, Kristen C Thomas, James R Krycer, Sean J Humphrey, Benjamin L Parker, Kelsey H Fisher-Wellman, Christopher C Meoli, Nolan J Hoffman, Ciana Diskin, James G Burchfield, Mark J Cowley, Warren Kaplan, Zora Modrusan, Ganesh Kolumam, Jean YH Yang, Daniel L Chen, Dorit Samocha-Bonet, Jerry R Greenfield, Kyle L Hoehn, Roland Stocker and David E James:
Mitochondrial CoQ deficiency is a common driver of mitochondrial oxidants and insulin resistance,
eLIFE,
7
(2018),
e32111.
65.
Wong G, Howell M, Patrick E, Yang YH
G. Wong, M. Howell, E. Patrick and J Yang:
Taking Kidneys for Granted? Time to Reflect on the Choices We Make,
Transplantation,
101
(2017),
no. 12,
2812–2813.
66.
Yang P, Liu W, Yang YH
Pengyi Yang, Wei Liu, Jean Yang:
Positive unlabeled learning via wrapper-based adaptive sampling,
Proceedings of the Twenty-Sixth International Joint Conference on Artificial Intelligence (IJCAI),
The Twenty-Sixth International Joint Conference on Artificial Intelligence,
Carles Sierra (ed.),
International Joint Conferences on Artificial Intelligence,
Melbourne,
(2017),
3273–3279.
ISBN 978-0-9992411-0-3.
67.
Ghazanfar S, Vuocolo T, Morrison JL, Nicholas LM, Millen ICM, Yang YH, Buckley MJ, Tellam RL
Shila Ghazanfar, Tony Vuocolo, Janna L. Morrison, Lisa M. Nicholas, Isabella C. McMillen, Jean Y. H. Yang, Michael J. Buckley and Ross L. Tellam:
Gene expression allelic imbalance in ovine brown adipose tissue impacts energy homeostasis,
PLOS ONE,
12
(2017),
e0180378.
68.
Yang P, Oldfield AJ, Kim T, Yang A, Yang YH, Ho JWK
Pengyi Yang, Andrew Oldfield, Taiyun Kim, Andrian Yang, Jean Yee Hwa Yang and Joshua W K Ho:
Integrative analysis identifies co-dependent gene expression regulation of BRG1 and CHD7 at distal regulatory sites in embryonic stem cells,
Bioinformatics,
33
(2017),
no. 13,
1916–1920.
69.
Chaudhuri R, Yang YH
Rima Chaudhuri and Jean Yee Hwa Yang:
Cross-Species PTM Mapping from Phosphoproteomic Data,
Protein Bioinformatics - From Protein Modifications and Networks to Proteomics,
Methods in Molecular Biology - Springer Protocols,
Humana Press,
USA,
(2017),
459–469.
ISBN 978-1-4939-6783-4.
70.
Patrick E, Schramm S-J, Ormerod JT, Scolyer RA, Mann GJ, Muller S, Yang YH
E Patrick, S-J Schramm, JT Ormerod, RA Scolyer, GJ Mann, S Mueller, YH Yang:
A multi-step classifier addressing cohort heterogeneity improves performance of prognostic biomarkers in three cancer types,
Oncotarget,
8
(2017),
no. 2,
2807–2815.
71.
Yang P, Patrick E, Humphrey SJ, Ghazanfar S, James DE, Jothi R, Yang YH
Pengyi Yang, Ellis Patrick, Sean J Humphrey, Shila Ghazanfar, David E James, Raja Jothi, Jean Yee Hwa Yang:
KinasePA: Phosphoproteomics data annotation using hypothesis driven kinase perturbation analysis,
Proteomics,
16
(2016),
no. 13,
1868–1871.
72.
Ghazanfar S, Yang YH
Shila Ghazanfar and Jean Yee Hwa Yang:
Characterizing mutation–expression network relationships in multiple cancers,
Computational Biology and Chemistry,
63
(2016),
73–82.
73.
Ghazanfar S, Bisogni AJ, Ormerod JT, Lin DM, Yang YH
Shila Ghazanfar, Adam J. Bisogni, John T. Ormerod, David M. Lin, and Jean Y. H. Yang:
Integrated single cell data analysis reveals cell specific networks and novel coactivation markers,
BMC Systems Biology,
10
(2016),
no. S5,
11–24.
74.
Banihashemi N, Robillard R, Yang YH, Carpenter JS, Hermens DF, Naismith SL, Terpening Z, White D, Scott EM, Hickie IB
Nahid Banihashemi, Rébecca Robillard, Jean Yang, Joanne S Carpenter, Daniel F Hermens, Sharon L Naismith, Zoe Terpening, Django White, Elizabeth M Scott and Ian B Hickie:
Quantifying the effect of body mass index, age, and depression severity on 24-h activity patterns in persons with a lifetime history of affective disorders,
BMC Psychiatry,
16 (1)
(2016),
no. 317,
75.
Madore J, Strbenac D, Vilain R, Menzies AM, Yang YH, Thompson JF, Long GV, Mann GJ, Scolyer RA, Wilmott JS
Jason Madore, Dario Strbenac, Ricardo Vilain, Alexander M Menzies, Jean Y H Yang, John F Thompson, Georgina V Long, Graham J Mann, Richard A Scolyer, and James SWilmott:
PD-L1 Negative Status is Associated with Lower Mutation Burden, Differential Expression of Immune-Related Genes, and Worse Survival in Stage III Melanoma,
Clinical Cancer Research,
22
(2016),
no. 15,
3915–3923.
76.
Strbenac D, Mann GJ, Yang YH, Ormerod JT
Dario Strbenac, Graham J Mann, Jean Y H Yang and John T Ormerod:
Differential distribution improves gene selection stability and has competitive classification performance for patient survival,
Nucleic Acids Research,
44
(2016),
no. 13,
e119.
77.
Markus MA, Yang YH, Morris BJ
M Andrea Markus, Yee Hwa J Yang, Brian J Morris:
Transcriptome-wide targets of alternative splicing by RBM4 and possible role in cancer,
Genomics,
107
(2016),
no. 4,
138–144.
78.
Yang P, Patrick E, Humphrey SJ, Ghazanfar S, James DE, Jothi R, Yang YH
Pengyi Yang, Ellis Patrick, Sean J. Humphrey, Shila Ghazanfar, David E. James, Raja Jothi, Jean Yee Hwa Yang:
KinasePA: Phosphoproteomics data annotation using hypothesis driven kinase perturbation analysis,
Proteomics,
16
(2016),
1868 – 1871.
79.
Jayawardana K, Schramm SJ, Tembe V, Muller S, Thompson JF, Scolyer RA, Mann GJ, Yang YH
K Jayawardana, S-J Schramm, V Tembe, S Mueller, JF Thompson, RA Scolyer, GJ Mann, J Yang:
Identification, Review, and Systematic Cross-Validation of microRNA Prognostic Signatures in Metastatic Melanoma,
Journal of Investigative Dermatology,
136
(2016),
245–254.
80.
Strbenac D, Mann GJ, Ormerod JT, Yang YH
Dario Strbenac, Graham J Mann, John T Ormerod and Jean Y H Yang:
ClassifyR: an R package for performance assessment of classification with applications to transcriptomics,
Bioinformatics,
31
(2015),
no. 11,
1851–1853.
81.
Yang P, Zheng X, Jayaswal V, Hu G, Yang YH, Jothi R
Pengyi Yang, Xiaofeng Zheng, Vivek Jayaswal, Guang Hu, Jean Yee Hwa Yang, Raja Jothi:
Knowledge-Based Analysis for Detecting Key Signaling Events from Time-Series Phosphoproteomics Data,
PLoS Computational Biology,
11
(2015),
no. 8,
Art. e100440318 (18 pages).
82.
Patrick E, Buckley MJ, Muller S, Lin DM, Yang YH
E Patrick, M Buckley, S Müller, DM Lin, YH Yang:
Inferring data-specific micro-RNA function through the joint ranking of micro-RNA and pathways from small sample miRNA-Seq and mRNA-Seq data,
Bioinformatics,
31
(2015),
no. 17,
2822–2828.
83.
Chaudhuri R, Sadrieh A, Hoffman N, Parker B, Humphrey SJ, Stöckli J, Hill A, James DE, Yang YH
Rima Chaudhuri, Arash Sadrieh, Nolan Hoffman, Benjamin Parker, Sean Humphrey, Jacqueline Stöckli, Adam Hill, David James, Jean Yang:
PhosphOrtholog: a web-based tool for cross-species mapping of orthologous protein post-translational modification,
BMC Genomics,
16
(2015),
no. 1,
Art. 617.
84.
Jayawardana K, Schramm SJ, Haydu L, Thompson JF, Scolyer RA, Mann GJ, Muller S, Yang YH
Kaushala Jayawardana, Sarah-Jane Schramm, Lauren Haydu, John F Thompson, Richard A Scolyer, Graham J Mann, Samuel Müller and Jean Yee Hwa Yang:
Determination of prognosis in metastatic melanoma through integration of clinico-pathologic, mutation, mRNA, microRNA, and protein information,
International Journal of Cancer,
136
(2015),
no. 4,
863–874.
85.
Mactier S, Kaufman KL, Wang P, Crossett B, Pupo GM, Kohnke PL, Thompson JF, Scolyer RA, Yang YH, Mann GJ, Christopherson RI
Swetlana Mactier, Kimberley L Kaufman, Penghao Wang, Ben Crossett, Gulietta M Pupo, Philippa L Kohnke, John F Thompson, Richard A Scolyer, Jean Y Yang, Graham J Mann and Richard I Christopherson:
Protein signatures correspond to survival outcomes of AJCC stage III melanoma patients,
Pigment Cell and Melanoma Research,
27
(2014),
no. 6,
1106–1116.
86.
Ma X, Yang P, Kaplan WH, Lee BH, Wu LE, Yang YH, Yasunaga M, Sato K, Chisholm DJ, James DE
Xiuquan Ma, Pengyi Yang, Warren H Kaplan, Bon Hyang Lee, Lindsay E Wu, Jean Yee-Hwa Yang, Mayu Yasunaga, Kenzo Sato, Donald J Chisholm, David E James:
ISL1 Regulates Peroxisome Proliferator-Activated Receptor γ Activation and Early Adipogenesis via Bone Morphogenetic Protein 4-Dependent and -Independent Mechanisms,
Molecular and Cellular Biology,
34
(2014),
no. 29,
3607–3617.
87.
Parnell GP, O'Connor KS, Patrick E, Ahlenstiel G, Suppiah V, van der Poorten D, Read SA, Leung R, Douglas MW, Yang YH, Stewart GJ, Liddle C, George J, Booth DR
O'Connor KS, Parnell G, Patrick E, Ahlenstiel G, Suppiah V, van der Poorten D, Read SA, Leung R, Douglas MW, Yang JY, Stewart GJ, Liddle C, George J and Booth DR:
Hepatic metallothionein expression in chronic hepatitis C virus infection is IFNL3 genotype-dependent,
Genes and Immunity,
15
(2014),
no. 2,
88–94.
88.
Yang P, Patrick E, Tan SX, Fazakerley DJ, Burchfield JG, Gribben C, Prior MJ, James DE, Yang YH
Pengyi Yang, Ellis Patrick, Shi-Xiong Tan, Daniel J Fazakerley, James Burchfield, Christopher Gribben, Matthew J Prior, David E James and Yee Hwa Yang:
Direction pathway analysis of large-scale proteomics data reveals novel features of the insulin action pathway,
Bioinformatics,
30
(2014),
no. 6,
808–814.
89.
Tonks KT, Ng Y, Miller S, Coster AC, Samocha-Bonet D, Iseli TJ, Xu A, Patrick E, Yang YH, Junutula JR, Modrusan Z, Kolumam G, Stöckli J, Chisholm DJ, James DE, Greenfield JR
KT Tonks, Y Ng, S Miller, AC Coster, D Samocha-Bonet, TJ Iseli, A Xu, E Patrick, JY Yang, JR Junutula, Z Modrusan, G Kolumam, J Stöckli, DJ Chisholm, DE James, JR Greenfield:
Impaired Akt phosphorylation in insulin-resistant human muscle is accompanied by selective and heterogeneous downstream defects.,
Diabetologia,
56
(2013),
no. 4,
875–885.
90.
Wang P, Yang YH, Raftery M, Zhong L, Wilson SR
Penghao Wang, Jean Yee Hwa Yang, Mark Raftery, Ling Zhong, Susan R Wilson:
Latin Square Dataset for Evaluating the Accuracy of Mass Spectrometry-based Protein Identification and Quantification,
Proceedings of the 2013 IEEE Conference on Bioinformatics and Biomedicine (BIBM),
2013,
Guo-Zheng Li, Sunghoon Kim, Michael Hughes, Geoff McLachlan, Hongye Sun, Xiaohua Hu, Habtom Ressom, Baoyan Liu, Michel Liebman (eds.),
IEEE Explore,
IEEE,
USA,
(2013),
65–67.
91.
Jayaswal V, Schramm SJ, Mann GJ, Wilkins MR, Yang YH
Vivek Jayaswal, Sarah-Jane Schramm, Graham J Mann, Marc R Wilkins and Yee Hwa Yang:
VAN: an R package for identifying biologically perturbed networks via differential variability analysis,
BMC Research Notes,
6
(2013),
no. 430,
Online.
92.
Strbenac D, Armstrong NJ, Yang YH
Dario Strbenac, Nicola J Armstrong, Jean YH Yang:
Detection and classification of peaks in 5' cap RNA sequencing data,
BMC Genetics,
14
(2013),
no. Sup. 5,
1–11.
93.
Strbenac D, Armstrong NJ, Yang YH
Dario Strbenac, Nicola J Armstrong and Jean YH Yang:
Correction: Detection and classification of peaks in 5' cap RNA sequencing data,
BMC Genetics,
14
(2013),
no. 1,
Art. 767.
94.
Patrick E, Buckley MJ, Lin DM, Yang YH
Ellis Patrick, Michael Buckley, David Ming Lin, Yee Hwa Yang:
Improved moderation for gene-wise variance estimation in RNA-Seq via the exploitation of external information,
BMC Genomics,
14
(2013),
no. Supplement 1,
1–9.
95.
Jayawardana K, Muller S, Schramm SJ, Mann GJ, Yang YH
Kaushala Jayawardana, Samuel Müller, Sarah-Jane Schramm, Graham J Mann and Jean Yang:
Vertical Data Integration for Melanoma Prognosis,
Proceedings,
59th ISI World Statistics Congress,
(2013),
1–6.
96.
Yang YH, Markus MA, Mangs AH, Raitskin O, Sperling R, Morris BJ
Yee Hwa J Yang, M Andrea Markus, A Helena Mangs, Oleg Raitskin, Ruth Sperling, Brian J Morris:
ZRANB2 localizes to supraspliceosomes and influences the alternative splicing of multiple genes in the transcriptome,
Molecular Biology Reports,
40
(2013),
no. 9,
5381–5395.
97.
Schramm SJ, Li SS, Jayaswal V, Fung DCY, Campain AE, Pang CNI, Scolyer RA, Yang YH, Mann GJ, Wilkins MR
S J Schramm, S S Li, V Jayaswal, D C Y Fung, A E Campain, C N I Pang, R A Scolyer, Y H Yang, G J Mann, M R Wilkins:
Disturbed protein-protein interaction networks in metastatic melanoma are associated with worse prognosis and increased functional mutation burden,
Pigment Cell and Melanoma Research,
26
(2013),
no. 5,
708–722.
98.
Humphrey SJ, Yang G, Yang P, Fazakerley DJ, Stöckli J, Yang YH, James DE
Sean J Humphrey, Guang Yang, Pengyi Yang, Daniel J Fazakerley, Jacqueline Stöckli, Jean Y Yang, and David E James:
Dynamic adipocyte phosphoproteome reveals that akt directly regulates mTORC2,
Cell Metabolism,
17
(2013),
no. 6,
1009–1020.
99.
Patrick E, Buckley MJ, Yang YH
Ellis Patrick, Michael Buckley and Yee Hwa Yang:
Estimation of data-specific constitutive exons with RNA-Seq data,
BMC Bioinformatics,
14
(2013),
no. 31,
1–10.
100.
Mann GJ, Pupo GM, Campain AE, Carter CD, Schramm SJ, Pianova S, Gerega SK, De Silva C, Lai K, Wilmott JS, Synnott M, Hersey P, Kefford RF, Thompson JF, Yang YH, Scolyer RA
Graham J Mann, Gulietta M Pupo, Anna E Campain, Candace D Carter, Sarah-Jane Schramm, Svetlana Pianova, Sebastien K Gerega, Chitra De Silva, Kenneth Lai, James S Wilmott, Maria Synnott, Peter Hersey, Richard F Kefford, John F Thompson, Yee Hwa Yang and Richard A Scolyer:
BRAF Mutation, NRAS Mutation, and the Absence of an Immune-Related Expressed Gene Profile Predict Poor Outcome in Patients with Stage III Melanoma,
Journal of Investigative Dermatology,
133
(2013),
509–517.
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